Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLLEIKDLVYKASDRIILDHISLKVDKGESIAIIGPSGSGKSTFQKQICNLISPTSGELYFKGKPYNDYDPEELRQRISYLMQQSDLFGETIEDNMIFPSLARNDKFDRKRAKQLIKDVGLGHYQLS------SEVE----NMSGGERQRIAIARQLMYTPDILLLDESTSALDVNNKEKIENIIFKLVEQDVAIMWITHSDDQSMRHFQKRITIVDGKISKVEELNQHE
3QF4 Chain:A ((358-518))
----------------VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL---KWGREDATDDEIVEA-AKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI-------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3QF4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22390 for 1022 contacts (-21.9/contact) +
2D Compatibility (PS) -16449 + (NN) -6693 + (LL) 6596
1D Compatibility (HY) -12000 + (ID) 2600
Total energy: -53536.0 ( -52.38 by residue)
QMean score : 0.370
(partial model without unconserved sides chains):
PDB file :
Tito_3QF4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QF4-query.scw
PDB file :
Tito_Scwrl_3QF4.pdb
: