Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRELMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFAAREF
1NDC Chain:A ((8-143))
-KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEEL
General information:
TITO was launched using:
RESULT:
Template:
1NDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65006 for 1046 contacts (-62.1/contact) +
2D Compatibility (PS) -14237 + (NN) -1344 + (LL) 208
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -95479.0 ( -91.28 by residue)
QMean score : 0.583
(partial model without unconserved sides chains):
PDB file :
Tito_1NDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDC-query.scw
PDB file :
Tito_Scwrl_1NDC.pdb
: