Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQLFLIIGAPGSGKTTDAELIAKNNSETIAHFSTGDLLRAESAKKTERGLLIEKFTSQGELVPLEIVVETILSAIKSSSKGIILIDGYPRSVEQMQALDKELNAQNEVILKSVIEVEVSENTAKERVLGRSR------------------------------GADDNERVFHNRMRVFLDPLVEIQNFYKAKHLHKIINGERSIEEIVNEMQKYILSFAN
1ZD8 Chain:A ((6-215))
-LLRAVIMGAPGSGKGTVSSRITTHF--ELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRAY------QIDTVINLNVPFEVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGTE-TNKIWPYVYAFLQTKVP
General information:
TITO was launched using:
RESULT:
Template:
1ZD8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84971 for 1336 contacts (-63.6/contact) +
2D Compatibility (PS) -19861 + (NN) -13367 + (LL) 656
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -129293.0 ( -96.78 by residue)
QMean score : 0.605
(partial model without unconserved sides chains):
PDB file :
Tito_1ZD8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZD8-query.scw
PDB file :
Tito_Scwrl_1ZD8.pdb
: