Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVLIINGAKAFGHSGGKLNETLTHHAKKILESLGLEVDTTIVDKGYEKSQEVEKFFSADATIWQMPGWWMGEPWIVKKYIDEVFTSGHGKLYASDGRSSQNPTKNYGKGGLMQGKKYMLSLTWNAPIEAFNDPSEFFEGVGVDVVYLHLHKAFQFLGLSALPTFIC-----NDVMKNPQVEQYLNSLTVHLRQAFGK
1RLI Chain:A ((5-183))
--KIAVINGGT-------RSGGNTDVLAEKAVQGFDAEHIY------LDYDSIIERILQCHILIFATPIYWFGMSGTLKLFIDRWSQT-------------LRDPRFPDFKQQMSVKQAYVIAVGGDNPKIK-----------GLPLIQQFEHIFHFMGMSFKGYVLGEGNRPGDILRDHQALSAASRLLKRSDA----
General information:
TITO was launched using:
RESULT:
Template:
1RLI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78683 for 1155 contacts (-68.1/contact) +
2D Compatibility (PS) -15905 + (NN) -2482 + (LL) 420
1D Compatibility (HY) -2400 + (ID) 1200
Total energy: -100250.0 ( -86.80 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1RLI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLI-query.scw
PDB file :
Tito_Scwrl_1RLI.pdb
: