Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKKIFLLEDDYLLSESIKEFLEHLGYEVFCAFNGKEAHERLSVERFNLLLLDVQVPEMNSLELFKRIKNDFLISTPVIFITALQDNATLKNAFNLGASDYLKKPFDLDELEARIKRFFNDDPI---EIMP-----NIFYH--QHALNVKGKKEILAPKTAQLLEYFLEHKGQIISSQALENNLWEQAI-DDSTLRTYIKVLRKLLGKN--CIETHKGVGYRFNPL
1YS7 Chain:A ((8-232))
--PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRA-MDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFADTNVVDVFIGYLRRKLEAGPRLLHTVRGVGFVLRMQ
General information:
TITO was launched using:
RESULT:
Template:
1YS7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129439 for 1700 contacts (-76.1/contact) +
2D Compatibility (PS) -22523 + (NN) -7389 + (LL) 252
1D Compatibility (HY) -14400 + (ID) 2600
Total energy: -176099.0 ( -103.59 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_1YS7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS7-query.scw
PDB file :
Tito_Scwrl_1YS7.pdb
: