Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRIGQGYDVHKLAYDRDLIIGGVKIPYEKGLLGHSDADVLLHAITDAIIGAIGAGDIGHFFPDTDMVFKDADSAELLAEIWQKVEADGFRLGNLDATIIAEKPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK
2PMP Chain:A ((3-159))
PFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMK
General information:
TITO was launched using:
RESULT:
Template:
2PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105749 for 1282 contacts (-82.5/contact) +
2D Compatibility (PS) -17513 + (NN) -10602 + (LL) 0
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -150164.0 ( -117.13 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_2PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMP-query.scw
PDB file :
Tito_Scwrl_2PMP.pdb
: