Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MKNLESVEQFNAIKSEGKSVFMFSADWCGDCKFIEPVMPEIEA---ENEDFSFYHV---DRDEFIDLCADLAI-FGIPSFLAFEDGEEVGRFVSKDRKTKEEINDFLAAI--
2TRX Chain:A ((1-108))
SDKIIHL-TDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNID---QNPGTAPKYGIR-GIPTLLLFKNGEVAATKVGAL--SKGQLKEFLDANLA
General information:
TITO was launched using:
RESULT:
Template:
2TRX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66394 for 618 contacts (-107.4/contact) +
2D Compatibility (PS) -9645 + (NN) 618 + (LL) 436
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: -81885.0 ( -132.50 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2TRX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TRX-query.scw
PDB file :
Tito_Scwrl_2TRX.pdb
: