Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGRKTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYRLFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
3S9U Chain:A ((5-164))
RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHVEGCEVAHSVEEVFELCKNEEEIFIFGGAQIYDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLTDEKNPYTYYYHVYEKQ
General information:
TITO was launched using:
RESULT:
Template:
3S9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91925 for 1175 contacts (-78.2/contact) +
2D Compatibility (PS) -17098 + (NN) -5085 + (LL) 0
1D Compatibility (HY) -18000 + (ID) 3750
Total energy: -135858.0 ( -115.62 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_3S9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S9U-query.scw
PDB file :
Tito_Scwrl_3S9U.pdb
: