Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKTKRKMIYETFMLILILLSLALLPYRNNFTFILNWIIWVIFTLDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGFRAARIVSFVHLLSITAMGRRYIVPIYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPE-----INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKPTNSS-TQRAN---KITQLISETPDLTKEEIAVVEQFLTLRKKELADENTKSDSE
3PJS Chain:K ((27-158))
-------------------------------------------------------------------------------------------------------------RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQFVRHSEKAAEEAYTRTTRAL-HERFDRLERMLDDN--------------
General information:
TITO was launched using:
RESULT:
Template:
3PJS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89991 for 729 contacts (-123.4/contact) +
2D Compatibility (PS) -13064 + (NN) -4454 + (LL) 11424
1D Compatibility (HY) -11200 + (ID) 1800
Total energy: -109085.0 ( -149.64 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3PJS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PJS-query.scw
PDB file :
Tito_Scwrl_3PJS.pdb
: