Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
2J27 Chain:A ((3-250))
KPQPIAAANWKCNGSQQSLSELIDLFNSTSI-NHDVQCVVASTFVHLAMTKERLSHPKFVIAAQNAI-AKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEAVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPE-FVDIIKATQ
General information:
TITO was launched using:
RESULT:
Template:
2J27.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113661 for 2142 contacts (-53.1/contact) +
2D Compatibility (PS) -26996 + (NN) -12034 + (LL) 76
1D Compatibility (HY) -17600 + (ID) 4750
Total energy: -174965.0 ( -81.68 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_2J27.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J27-query.scw
PDB file :
Tito_Scwrl_2J27.pdb
: