Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGLEVAKEVRKT-SHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTENIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMKSYE
1YS7 Chain:A ((8-232))
-PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSS--------SETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFA-DTNVVDVFIGYLRRKLEAG---PRLLHTVRGVGFVLRMQ-
General information:
TITO was launched using:
RESULT:
Template:
1YS7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132944 for 1834 contacts (-72.5/contact) +
2D Compatibility (PS) -23618 + (NN) -11996 + (LL) 568
1D Compatibility (HY) -17200 + (ID) 4850
Total energy: -190040.0 ( -103.62 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_1YS7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS7-query.scw
PDB file :
Tito_Scwrl_1YS7.pdb
: