Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVR-DTFFLQQKSQMAS---RADVSLAKDLQDTLHANQNYCVGMAANMIGSLKRVIIINVG-----ITNLVMFNPVLVAKS-DPYETEESCLSLVG-CRSTQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
3PN3 Chain:A ((1-143))
--MEIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKT--DGIGLSAPQVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSVKIDARDITGERFSISLSRLPARIFQHEYDHLEGVLF
General information:
TITO was launched using:
RESULT:
Template:
3PN3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74848 for 977 contacts (-76.6/contact) +
2D Compatibility (PS) -13933 + (NN) 1446 + (LL) 452
1D Compatibility (HY) -8800 + (ID) 1900
Total energy: -97583.0 ( -99.88 by residue)
QMean score : 0.404
(partial model without unconserved sides chains):
PDB file :
Tito_3PN3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PN3-query.scw
PDB file :
Tito_Scwrl_3PN3.pdb
: