Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRIGQGFDVHQLVEGRPLIIGGIEIPYEKGLLGHSDADVLLHTVADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLQHVWGIVKQKGYVLGNIDCTIIAQKPKMLPYIEDMRKRIAEGLEADVSQVNVKATTTEKLGFTGRAEGIAAQATVLIQKG
2PMP Chain:A ((3-160))
PFRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMKK
General information:
TITO was launched using:
RESULT:
Template:
2PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109512 for 1290 contacts (-84.9/contact) +
2D Compatibility (PS) -17407 + (NN) -10320 + (LL) 0
1D Compatibility (HY) -11600 + (ID) 3800
Total energy: -152639.0 ( -118.32 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_2PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMP-query.scw
PDB file :
Tito_Scwrl_2PMP.pdb
: