Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTQFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKVAWKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQE--------------------------------------------------DGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPELWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV
4DQ1 Chain:A ((6-317))-NSFDAAYHSLCEEVLEIGNTRN--DRT-NT-----G--TISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDT-NIQYLLKYNNNIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVDKD-GNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD-KSIFDINYEDLEIVDYESHPAIKA----


General information:
TITO was launched using:
RESULT:

Template: 4DQ1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1096 10118 9.23 38.77
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : 9.23
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.411

(partial model without unconserved sides chains):
PDB file : Tito_4DQ1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DQ1-query.scw
PDB file : Tito_Scwrl_4DQ1.pdb: