Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2X7K Chain:A ((9-165))
-----------WQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELAR---------------RGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQ--GIGMVNRVGMVETNSQDRPVDDVKIIKAYPS
General information:
TITO was launched using:
RESULT:
Template:
2X7K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87060 for 1231 contacts (-70.7/contact) +
2D Compatibility (PS) -16439 + (NN) -11514 + (LL) 100
1D Compatibility (HY) -12400 + (ID) 3800
Total energy: -131113.0 ( -106.51 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_2X7K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X7K-query.scw
PDB file :
Tito_Scwrl_2X7K.pdb
: