Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANTGSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERGSQFSQDADPRYADIGGG--PLTECLADVVARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDEIVGLNIPTGIPLRYDLDSAMRPLVRGGTY-------LDPEAAAAGAAAVAGQGRG
1QHF Chain:A ((1-240))
----PKLVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDVIAKDLLSGKTVMIAAHGNSLRGLVKHLEGISDADIAKLNIPTGIPLVFELDENLKPSKPSYYLDPEAAAA--------------GAAAV
General information:
TITO was launched using:
RESULT:
Template:
1QHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92171 for 1913 contacts (-48.2/contact) +
2D Compatibility (PS) -25564 + (NN) -17744 + (LL) 1560
1D Compatibility (HY) -20800 + (ID) 6950
Total energy: -161669.0 ( -84.51 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1QHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QHF-query.scw
PDB file :
Tito_Scwrl_1QHF.pdb
: