Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDVLRTPDSRFEHLVGYPFAPHYVDVTAGDTQPLRMHYVDEGPGDGPPIVLLHGEPTWSYLYRTMIPPLSAAGHRVLAPDLIGFGRSDKPTRIEDYTYLRHVEWVTSWFENLDLHDVTLFVQDWGSLIGLRIAAEHGDRIARLVVANGFLPAAQGR-TPLPFYVWRAFARYSP-VLPA----GRLVNFGTV----HRVPAGVRAGYDAPFPDKTYQAGARAFPRLVPTSPDDPAVPAN-RAAWEALGRWDKPFLAIFGYRDPILGQAD-GPLIKHIPGAAGQPHARI-KASHFIQEDSGTELAERMLSWQQAT |
| 3G9X Chain:A ((8-292)) | ----------------FPFDPHYVEVL-----GERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVA-PSHRCIAPDLIGMGKSDKPD--LDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRTADVGRELIIDQNAFIEGALPKCVVRPLTEVEMDHYREPFLKPVDREPLWRFPNELPIAGEPANIVALVEAYMNWLHQSPVPKLLFWGTPGVLIPPAEAARLAESLPNC---KTVDIGPGLHYLQEDNPDLIGSEIARWLPA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3G9X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153547 for 2278 contacts (-67.4/contact) +
2D Compatibility (PS) -29109 + (NN) -11755 + (LL) 1644
1D Compatibility (HY) -16800 + (ID) 4150
Total energy: -213717.0 ( -93.82 by residue)
QMean score : 0.439
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