Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGFLTGKRALIVGVASKLSIASGIAAAMHREGAELAFTYQNDKLRGRVEEFASGWGSRPELCFPCDVADDSQIEAVFAALGKHWDGLDIIVHSVGFAPGDQLDGDFTAVTTREGFRIAHDISAYSFIALAKAGREMMKGRNG-SLLTLSYLGAERTMPNYNVMGMAKASLEAGVRYLAGSLGAEGTRVNAVSAGPIRTLAASGIKSFRKMLAANERQTPLRRNVTIEEVGNAGAFLCSDLASGISGEILYVDGGFNTTAMGPLDDD
2PD4 Chain:B ((2-260))
-GFLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNS--PYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLE-TSKSAFNTAMEISVYSLIELTNTLKPLL--NNGASVLTLSYLGSTKYMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHVMGMGAVEEK
General information:
TITO was launched using:
RESULT:
Template:
2PD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183736 for 2214 contacts (-83.0/contact) +
2D Compatibility (PS) -28487 + (NN) -13038 + (LL) 252
1D Compatibility (HY) -30800 + (ID) 6400
Total energy: -262209.0 ( -118.43 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_2PD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PD4-query.scw
PDB file :
Tito_Scwrl_2PD4.pdb
: