Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPCEEEIQIRDMARQFAQERLK-PFAADWDREHRFPAEAIREMADLGFLGMLVPEEWGGAQTGHLAYAMALEEIAAGDGACSTIMSVHNSVGCMPIHKFGSAEQKERFLRPLAQGSMLGAFALTEPQAGSDASFLKTRARRDGDHYVLNGAKQFITSGSHAGMVIVFAVTDPDAGKRGISAFIVPTDTPGYEVVRIEDKLGQHASDTCQLAFNDLRIPATLRLGEEGEGYRIALANLEGGRIGIAAQAVGMARAAFEAARDYAHERETFGKPIIEHQAVAFRLADMATRIAVARQMVHHAASLREAGLPCLTEASMAKLFASEMAEEVCSAAIQTLGGYGYLKDFPVERIYRDVRVCQIYEGTSDVQRLVIARSL |
| 3NF4 Chain:A ((15-385)) | -LPSQEAAELIELTREIADKVLDPIVDRHEKDE-TYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG----SRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANE------KIIDH-GLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3NF4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -206197 for 3069 contacts (-67.2/contact) +
2D Compatibility (PS) -40186 + (NN) -25780 + (LL) 380
1D Compatibility (HY) -21600 + (ID) 7500
Total energy: -300883.0 ( -98.04 by residue)
QMean score : 0.454
|
|
|