Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHSLQAKILDPRLGSDFPLPQYATPGSAGLDLRAMLKEDSVLGPGQTLLIPTGLSIYIADPGLAALVLPRSGLGHKHGIVLGNLVGLIDSDYQGELMVSCWNRG-ESPFTIAVGERIAQLVLVPVVQAHFELVEAFDESQRGAGGFGHSGSH
1SM8 Chain:B ((29-153))
-----------RLDPGLPLPSRAHDGDAGVDLYS--AEDVELAPGRRALVRTGVAVAVPF-GMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEA-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89277 for 819 contacts (-109.0/contact) +
2D Compatibility (PS) -13162 + (NN) -4443 + (LL) 804
1D Compatibility (HY) -7600 + (ID) 2450
Total energy: -116128.0 ( -141.79 by residue)
QMean score : 0.330
(partial model without unconserved sides chains):
PDB file :
Tito_1SM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM8-query.scw
PDB file :
Tito_Scwrl_1SM8.pdb
: