Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------MVEQKDKYRP-----------CVGIMLFNKQGHVFI-GKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAKNKDWIYYNLPEEVIPTCWNGRYSGQKQRWFLMKFYGEGKDININYTDHPE-FKEWR-WQSVDNLVAGAIPFK-KEVYKTVIEEFSSQIKVSIIK
3FCM Chain:A ((3-186))
LNYIEDIKNYIPFNEQEERDKELFLRCLNDFHDILTRDNTIAHLTSSAFAVNKERNKFLMIHHNIYN-SWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDK----AFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSE------DETLMLKEGVMWIPFNEISKYCSEPHMIPIYEKLINKLKT--------
General information:
TITO was launched using:
RESULT:
Template:
3FCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38772 for 940 contacts (-41.2/contact) +
2D Compatibility (PS) -15300 + (NN) -3321 + (LL) 1736
1D Compatibility (HY) -2800 + (ID) 1000
Total energy: -59457.0 ( -63.25 by residue)
QMean score : 0.387
(partial model without unconserved sides chains):
PDB file :
Tito_3FCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FCM-query.scw
PDB file :
Tito_Scwrl_3FCM.pdb
: