Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKA--PYNKAHKNLDTKKYCQS
1GMZ Chain:A ((1-117))
----------------------DLWQFGKMILKET-GKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKL---TSC-----KPKTDRYSYSRKDGTIVCG-E-DPCRKEICECDKAAAVCFRENLDTYNKKYMSYLKS-LCKK
General information:
TITO was launched using:
RESULT:
Template:
1GMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66362 for 832 contacts (-79.8/contact) +
2D Compatibility (PS) -12351 + (NN) -10241 + (LL) 2808
1D Compatibility (HY) -9200 + (ID) 2550
Total energy: -97896.0 ( -117.66 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1GMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMZ-query.scw
PDB file :
Tito_Scwrl_1GMZ.pdb
: