Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQSDEQRVHK------------GKDEWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
2QJY Chain:C ((9-187))
------------------------------GTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADVQALASIFVDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAPENLPIPLAKFIDETTIQLG---
General information:
TITO was launched using:
RESULT:
Template:
2QJY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44561 for 1094 contacts (-40.7/contact) +
2D Compatibility (PS) -17896 + (NN) -5488 + (LL) 1368
1D Compatibility (HY) -13600 + (ID) 3600
Total energy: -83777.0 ( -76.58 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2QJY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QJY-query.scw
PDB file :
Tito_Scwrl_2QJY.pdb
: