Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNHLLSMEHLSTDQIYKLIQKASQFKSGER---QLPNFEGKYVANLFFENSTRTKCSFEMAELKLGLKTISFET-STSSVSKGESLYDTCKTLESIGCDLLVIRHPFNNYYEKLANI-NIPIANAGDGSGQHPTQSLLDLMTIYEEYGYFEGLNVLICGDIKNSRVARSNYHSLKALGANVMFNSPNAWIDDS-LE----------APYVNIDDVIETVDIVMLLRIQHERHGLAEETRFAADDYHQKHGLNEVRYNKLQEHAIVMHPAPVNRGVEIQSDLVEASKSRIFKQMENGVYLRMAVIDELLK |
1ML4 Chain:A ((5-306)) | GRDVISIRDFSKEDIETVLATAERLERELKEKGQLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQY-CDVIVIRHPKEGAARLAAEVAEVPVINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDE----QEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRV--DEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1ML4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168716 for 2467 contacts (-68.4/contact) +
2D Compatibility (PS) -30583 + (NN) -6930 + (LL) 116
1D Compatibility (HY) -19200 + (ID) 5200
Total energy: -230513.0 ( -93.44 by residue)
QMean score : 0.472
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