Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRELMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFAAREF
1KDN Chain:C ((8-143))
-KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEEL
General information:
TITO was launched using:
RESULT:
Template:
1KDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63018 for 1056 contacts (-59.7/contact) +
2D Compatibility (PS) -14237 + (NN) -1344 + (LL) 208
1D Compatibility (HY) -12000 + (ID) 3100
Total energy: -93491.0 ( -88.53 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1KDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDN-query.scw
PDB file :
Tito_Scwrl_1KDN.pdb
: