Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIKIQKIHPNALIPKYQTEGSSGFDLHAVEEVVIKPHSVGLVRIGICLSLEVGYELQVRTRSGLALNHQVMVLNSPGTVDNDYRGEIKVILANLSDKDFKVQVGDRIAQGVVQKTYKAEFIECEQLDETSRGSGGFGSTGVSKA
2OKD Chain:A ((22-132))
--------------PTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLSLKG---IDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSLD-----------------
General information:
TITO was launched using:
RESULT:
Template:
2OKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49602 for 697 contacts (-71.2/contact) +
2D Compatibility (PS) -11687 + (NN) -584 + (LL) 1868
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -68855.0 ( -98.79 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_2OKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OKD-query.scw
PDB file :
Tito_Scwrl_2OKD.pdb
: