Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLDHEKRRQLLNERHSCKMFDSHYEFSSTELEEIAEIARLSPSSYNTQPWHFVMVTNKDLKKQIAAHSY----FNEEMIKSASALMVVCSLKPSELLPTSHYMQNLYPE-SYKVRVIPSFAQMLG-V-RFNHSMQKLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEILEER-INKPKIVCLIALGKRVAEA-----SKKSRKSKVDAITWL
1VFR Chain:A ((2-218))
-----THPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSINSQPWKFIVIESDAAKQRMHDSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELK-GYECHVALAIGYHHPSEDYNASLPKSRKAFEDVITIL
General information:
TITO was launched using:
RESULT:
Template:
1VFR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115984 for 1426 contacts (-81.3/contact) +
2D Compatibility (PS) -21252 + (NN) -2000 + (LL) 424
1D Compatibility (HY) -4000 + (ID) 2250
Total energy: -145062.0 ( -101.73 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_1VFR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFR-query.scw
PDB file :
Tito_Scwrl_1VFR.pdb
: