Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFLALFFLALAGVAFAHDGGMGGMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAIIAIYSNPFLS
4BEM Chain:D ((5-81))
-----------------------GLDFIKACSAIGAGIAM-IAGVGPGIGQGFAAGKGAEAVGRQPEAQSDIIRTMLLGAAVAETTGIYGLIVALILLFANPFF-
General information:
TITO was launched using:
RESULT:
Template:
4BEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51614 for 439 contacts (-117.6/contact) +
2D Compatibility (PS) -7981 + (NN) -1480 + (LL) 1592
1D Compatibility (HY) 4400 + (ID) 400
Total energy: -55483.0 ( -126.38 by residue)
QMean score : -0.004
(partial model without unconserved sides chains):
PDB file :
Tito_4BEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BEM-query.scw
PDB file :
Tito_Scwrl_4BEM.pdb
: