Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSE-KTSFYTGEVEGVIAEQLCGTNGFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
1VP2 Chain:A ((15-203))
KLTVYLATTNPHKVEEIKMIAPEW-MEILPS--PE-KIEVVEDGETFLENSVKKAVVYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEH-SYKEKMRTILKMLEG---KDRRAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGEIP-HLKEKISHRSKAFRKLFSVLEKIL------
General information:
TITO was launched using:
RESULT:
Template:
1VP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70721 for 1545 contacts (-45.8/contact) +
2D Compatibility (PS) -20236 + (NN) -9446 + (LL) 976
1D Compatibility (HY) -12000 + (ID) 3450
Total energy: -114877.0 ( -74.35 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_1VP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP2-query.scw
PDB file :
Tito_Scwrl_1VP2.pdb
: