Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEM-ITNRGTIRIKLFPEIAPKTVENFVTHSKN---GYYDGLIFHRVIPEFMIQGGDP-DGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTG-MQDKPVNDVVIEKINIK-------------
2RMC Chain:A ((1-182))
---KRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLD-------------------G--------KHVVFGKVLDGMTVVHSIELQATDG-HDRPLTDCTIVNSGKIDVKTPFVVEVPDW
General information:
TITO was launched using:
RESULT:
Template:
2RMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43544 for 1305 contacts (-33.4/contact) +
2D Compatibility (PS) -16966 + (NN) -4815 + (LL) 2036
1D Compatibility (HY) -9200 + (ID) 3550
Total energy: -76039.0 ( -58.27 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_2RMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMC-query.scw
PDB file :
Tito_Scwrl_2RMC.pdb
: