Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVLSVI--QKVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHYGTFTQIKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYLYENRDSILTKEHFFEYLWQLEDRNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLNTVVKK
5DCL Chain:A ((5-120))
--QGKIYIVEDDMTIVSLLKDHLSA-SYHVSSVSNFRDVKQEIIAFQPDLILMDITLPYFNGFYWTAELRK-FLTIPIIFISSSNDEMDMVMALNMGGDDFISKPFSLAVLDAKLTAILR----------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5DCL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83217 for 810 contacts (-102.7/contact) +
2D Compatibility (PS) -12091 + (NN) -5567 + (LL) 9268
1D Compatibility (HY) -10000 + (ID) 2000
Total energy: -103607.0 ( -127.91 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_5DCL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5DCL-query.scw
PDB file :
Tito_Scwrl_5DCL.pdb
: