Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHSRLIGALTVVAIIVTACGSQPKSQPAVAPTGDAAAATQVPAGQTVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR---GRMSQDELTRRVTALTSR
1LU4 Chain:A ((1001-1134))
-----------------------------------------------ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNL-NFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL---
General information:
TITO was launched using:
RESULT:
Template:
1LU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104092 for 1030 contacts (-101.1/contact) +
2D Compatibility (PS) -13895 + (NN) -2815 + (LL) 3408
1D Compatibility (HY) -14000 + (ID) 3600
Total energy: -134994.0 ( -131.06 by residue)
QMean score : 0.653
(partial model without unconserved sides chains):
PDB file :
Tito_1LU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LU4-query.scw
PDB file :
Tito_Scwrl_1LU4.pdb
: