Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLQTRFAQLKQENRAALVTFVTAGDPDYASSLEILKGLPAAGADVIELGMPFTDPMADGPAIQLANIRALDGGQTLARTLQMVREFRSGDSETPLVLMGYFNPIHHYGVERFIAEAKEVGVDGLIVVDLPPEHNEDLCHPAQAAGIDFIRLTTPTTGDQRLPTVLEGSSGFVYYVSVAGVTGANAATLEHVEEAVARLRRHTDLPIGIGFGIRSAEHAAAVARLADGVVVGSALIDRIAKARDNAQAVKDVLALCGELAEGVRNAR
1UJP Chain:A ((5-239))
-----EAFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVL-PYADLLEIGLPYSD----GPVIQRASELALRKGMSVQGALELVREVRAL-TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSV------------EVKDLVRRIKARTALPVAVGFGVSGKATAAQA-AVADGVVVGSALVRALEEGRSLAPLLQEIRQGLQRLPLP-----
General information:
TITO was launched using:
RESULT:
Template:
1UJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -168026 for 1848 contacts (-90.9/contact) +
2D Compatibility (PS) -25356 + (NN) -18790 + (LL) 1860
1D Compatibility (HY) -20000 + (ID) 4500
Total energy: -234812.0 ( -127.06 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1UJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJP-query.scw
PDB file :
Tito_Scwrl_1UJP.pdb
: