Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQYLDLMRHVREHGTFKSDRTGTGTYSVFG-HQMRFDLAA-GFPLVTTKKCHLKSIVHELLWFLKGSTNIAYLKEHGVSIWDEWAD------------ENGDLGPVYGYQWRSWPAPD--------GRHIDQIANLMAMLKKNPDSRRLIVSAWNPALIDEMALPPCHALFQFYVAD------GKLSCQLYQRSADIFLGVPFNIASYALLTLMVAQVAGLQPGEFIWTGGDCHLYANHLEQADLQLTREPLPLPSMKLNPEVKDLFDFRFEDFELVGYEAHPHIKAPVAV |
1F28 Chain:A ((6-297)) | EQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHIEALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -203166 for 2130 contacts (-95.4/contact) +
2D Compatibility (PS) -28027 + (NN) -11018 + (LL) 0
1D Compatibility (HY) -30000 + (ID) 6500
Total energy: -278711.0 ( -130.85 by residue)
QMean score : 0.624
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