Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQRILIVGAGFAGMWSALSAVRQLDRQGRDDVEVAVLAPQPELRIRPR-FYEPDVQR------MAAPLGELFAAVGVRFVQG-SAQRIDVAGKRVEYRDA-EGTLAQLDYDRLVLAAGSGVWRPASVAGID--AAFDVDQLEDALRLEAHLHALRDLPDSPARNTVVVAGGGFTGIETATEMPARLRAILGEKAALRVIVVDRGAAIGA-SMGADLSGLIAEASAELGVEWCLGRSVAAVDAEG---VTLDDGQRIEAKTVVWTVGVRAST-LTGQIPGERDAQGRLHVDRNLKVLGLDDVYATGDVARAATD-DLGNHALMTCQHAIALGRSAGNNVAADLLGVEPIPYSQVKYVTCLDLGGWGAVFTEGWDRQVRFVREEGKKIKTEINGVWIYPPAADRAVALAAADPLIPVVA |
| 1NHP Chain:A ((1-316)) | --MKVIVLGSSHGGYEAVEELLNLHP-----DAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL-DIPGKDLDNIYLMRGRQWAIKLKQKTVD-------PEVNNVVVIGSGYIGIEAAEAFAKAG---------KKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLK-GTLELHPNGLIKTDEYMRT-SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEP---------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NHP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181204 for 2444 contacts (-74.1/contact) +
2D Compatibility (PS) -32581 + (NN) -9598 + (LL) 7296
1D Compatibility (HY) -10400 + (ID) 3000
Total energy: -229487.0 ( -93.90 by residue)
QMean score : 0.426
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