Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEQKDKYRPCVGIMLFNKQGHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAK-NKDWIYYNLPEEVIP---TCWNGRYSGQKQRWFLMKFYGEGKDININ--YTDHPEFKEWRWQSVDNLVAGAIPFKKEVYKTVIEEFSSQIKVSIIK
1F3Y Chain:A ((7-164))
-DSPPEGYRRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTS-AEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGEWSWVTPEQLIDLTVEFKKPVYKEVLSVFAPHL------
General information:
TITO was launched using:
RESULT:
Template:
1F3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55089 for 1136 contacts (-48.5/contact) +
2D Compatibility (PS) -16388 + (NN) -5653 + (LL) 1192
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -89738.0 ( -78.99 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1F3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3Y-query.scw
PDB file :
Tito_Scwrl_1F3Y.pdb
: