Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKKTKLIHGGHTTDDYTGAVTTPIYQTSTYLQDDIGDL----RQGYEYSRTANPTRSSVESVIAALENGKHGFAFSSGVAAIS-AVVMLLDKGDHIILNSDVYGGTYRALTKVFTRFGIEVDFVDTTHTDSIVQAIRPTTKMLFIETPSNPLLRVTDIKKSAEIAKEHGLISVVDNTFMTPYYQNPLDLGIDIVLHSATKYLGGHSDVVAG-LVATSDDKLAERLAF--ISNSTGGILGPQDSYLLVRGIKTLGLRMEQINRSVIEIIKMLQAHPAVQQVFHPSIESHLNHDVHMAQADGHTGVIAFEVKNT-ESAKQLIKATSYYTLAESLGAVESLISVPALMTHASIPADIRAKEGITDGLVRISVGIEDTEDLVDDLKQALDTL |
2RFV Chain:A ((8-396)) | -GFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARF--GYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHG-DVIGGIIVGKQ-EFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2RFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -230531 for 3327 contacts (-69.3/contact) +
2D Compatibility (PS) -41544 + (NN) -20844 + (LL) 276
1D Compatibility (HY) -30400 + (ID) 7850
Total energy: -330893.0 ( -99.46 by residue)
QMean score : 0.584
|
|
|