Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFEGKLIGKDLKVAIVVSRFNDFITGRLLEGAKDTLIRHDVNEDNIDVAFVPGAFEIPLVAKKLASSGNYDAIITLGCVIRGATSHYDYVCNEVAKGVSKVNDQTNVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLKSIKA
1NQX Chain:D ((4-154))
--YEGKLTAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR-
General information:
TITO was launched using:
RESULT:
Template:
1NQX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103185 for 1292 contacts (-79.9/contact) +
2D Compatibility (PS) -16995 + (NN) -9722 + (LL) 272
1D Compatibility (HY) -14000 + (ID) 3800
Total energy: -147430.0 ( -114.11 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1NQX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NQX-query.scw
PDB file :
Tito_Scwrl_1NQX.pdb
: