Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLIVQKYGGTSMGSIERIHNVAQRVLESVKLGHQVVVVVSAMSGETDRLLEFGKNFSHNP---------------------------------------------------------NKREMDRIVSAGEWISSAALSMALERYGHRAISLSGKEAGILTSSHFQNA-VIQSIDTQRITELLEKNYIVVIAGFQGADIQGETTTLGRGGSDLSAVALAGALKAHLCEIYTDVDGVYTTDPRIEEKAQKIAQISYDEMLELASMGAKVLLNRSVELAKKLSVKLVTRNSFNHS-EGTLIVAEKDFKGERMETPIVSGIALDKNQARVSMEG--VEDRPGIAAEIFGALAEYRINVDMIVQTIGRDGKTDLDFTIVKTQIEETKQALKPFL-------AQMDSIDYDENIAKVSIVGVGMKSHSGVASIAFKALAKDNINIMMIST--SEIKISVLIDIKYAELAVRTLHAVYQLDQ |
| 3C1M Chain:A ((2-470)) | -TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRDIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDME-----MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQG---SSETNISLVVSEEDVDKALKALKREFGDSFLNNNLIRDVSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C1M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -243704 for 3515 contacts (-69.3/contact) +
2D Compatibility (PS) -43014 + (NN) -15921 + (LL) 688
1D Compatibility (HY) -27600 + (ID) 7800
Total energy: -337351.0 ( -95.97 by residue)
QMean score : 0.542
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