Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MKVAISGAGVAGAALAHWLQRTGHTPTVIERAPKFRTGGYMIDFWGVGYQVAKRMGITDQIAAAGYHME-HVRSVGPTGKVKADLGVDVFRRMVGDDFTSLPRGDLAAAIYTTIEDQVETIFDDSIATIDEHRDGVRLTFERTAPRDFDLVIGADGLHSNVRRLVFGPERDFEHYLGCKVAACVVDGYRP----RDERSYVLYNTVDR-QLARFALRGDRTMFLFVFRAEHDNPGVAPKDELRDQFGDVGWESRDILAALDDVEDLYFDVVSQIRMDRWSRGRVLLIGDAAGCISLLGGEGTGLAITEAYVLAGELARAGGDHRRAFDAYEKRLRPFIEGKQASAAKFIWFFATRTRFGLWFRNVAMRTMNFGPLATLFAGSVRDDFELPDYTW |
| 4GF7 Chain:A ((10-379)) | KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKSVSKETFN--------GLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG--RLTLQTGEVLEADLIVGADGVGSKVRDSI-GFKQDRWVSKDGLIRLIVPRMKKELGHGEWDNTIDMWNFWPRVQRILYSPCNENELYLGLMAPAADPRGSSVPID-LEVWVEMFPFLEPCLIEAAKLKTARYDKYETTKLDSWTRGKVALVGDAAHAMCPALAQGAGCAMVNAFSLSQDL-EEGSSVEDALVAWETRIRPITDRCQALSGDYAANRSLSK--GNMFTPAALEAARYDPLRRVYSWPQ----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GF7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189560 for 3316 contacts (-57.2/contact) +
2D Compatibility (PS) -38528 + (NN) -10554 + (LL) 2188
1D Compatibility (HY) -8000 + (ID) 3850
Total energy: -248304.0 ( -74.88 by residue)
QMean score : 0.450
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