Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1U8Z Chain:A ((2-124))
LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG---YAAIRDNYFRSGEGFLCVFSITEMESFAATA-DFREQILRVKEDENVPFLLVGNKSDLEDK--------------
General information:
TITO was launched using:
RESULT:
Template:
1U8Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74705 for 797 contacts (-93.7/contact) +
2D Compatibility (PS) -12452 + (NN) -2847 + (LL) 920
1D Compatibility (HY) -8800 + (ID) 1950
Total energy: -99834.0 ( -125.26 by residue)
QMean score : 0.422
(partial model without unconserved sides chains):
PDB file :
Tito_1U8Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U8Z-query.scw
PDB file :
Tito_Scwrl_1U8Z.pdb
: