Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FPTDDDDKIVGGYTCAANSIPYQVSLNS-GSHFCGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDV-LEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPVLSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVSWG-YGCAQKNKPGVYTKVCNYVNWIQQTIAAN
2BDG Chain:A ((1-223))
--------IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANGR--MPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQA-
General information:
TITO was launched using:
RESULT:
Template:
2BDG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151825 for 1932 contacts (-78.6/contact) +
2D Compatibility (PS) -24151 + (NN) -10230 + (LL) -332
1D Compatibility (HY) -21600 + (ID) 4400
Total energy: -212538.0 ( -110.01 by residue)
QMean score : 0.748
(partial model without unconserved sides chains):
PDB file :
Tito_2BDG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BDG-query.scw
PDB file :
Tito_Scwrl_2BDG.pdb
: