Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYDVIISGGGLLGLITAVGLSNNSV-SVAVIEKNNLPRIIDDNRAFAISQGSRKILEKLGIWQFIESEAEPILDICILD-ENSPITVHYNH-KMVSEEPMGYVINSTVIWNAINNNFLNK-LNIYSL--HSYRTITCDAGYVEVTLGNN----QKLISSLLICAEGKNSKLPGLFSMSIIKFDY-KQSSIVFNVKHELHHQNLAVEQFFPG--GPFAILPMKS------GYTSSIVWTEKSEISKMLM---NLS----EEEFIIELKKRFGSYLGEVKLD---GERKSYPLSFA-SAKKLYKSRVLLIGDAAHSIHPVAGQGLNLGIRDAESVVRQITAAKAFGIDVGSSYLLKKISRDRCLDNFTMALATDGLNRIFSNRIFCAKTLRNFGLMAVENSKFLKKRFIRHAMGFV |
| 3C96 Chain:A ((4-371)) | -PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE--IRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG-ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSAVRAHLHPDQRPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRDGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNA----DV--AAALREYEEARRPTANKIILANREREKEEWAAASRPERPRL------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3C96.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189829 for 2915 contacts (-65.1/contact) +
2D Compatibility (PS) -35356 + (NN) 1748 + (LL) 2092
1D Compatibility (HY) -4000 + (ID) 2700
Total energy: -228045.0 ( -78.23 by residue)
QMean score : 0.411
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