Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIRVGINGLGRIGRSVLRAIHEVGKYNEQIEVVAVNGSLSTEQHAHLIRYDSVHGKFNGDIGFNESE-NWISTNGKKFSLYR-ERNPENIPWDV---DVVLECTGAFNKRAEAAKHNTG---KVIVSAPVSDADITIVYGVNNDMLKKEH-KVISAGSCTTNCLAPVVKVLHF-NLDMKSGFMTTVHAYTNDQNVLDGNHRDLRRA-RACGLSIVPTTTGAAKTIGSVIPELKGKLDGTAIRVPVANVSMVDLKFTTDKKVTAKEINEIFKNSV----NDVLSICKEPLVS-IDFVHNPYSAIVDLAGTYV-TGDICRVAAWYDNEWAFSLRMLDIALLCYNRI- |
| 1GD1 Chain:O ((1-334)) | -AVKVGINGFGRIGRNVFRAALKNPD----IEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVN---GNNLVVNGKEIIVKAE-RDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQ-FGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAA-AESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEE-PLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257953 for 2713 contacts (-95.1/contact) +
2D Compatibility (PS) -33447 + (NN) -5979 + (LL) 564
1D Compatibility (HY) -24800 + (ID) 7750
Total energy: -329365.0 ( -121.40 by residue)
QMean score : 0.499
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