Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVEIISNFLFDKIKNKQISGVTVNNWNLRV--PITQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKEQEVN--FFNDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNTITLIRQNGRSTYFCNACQN
1K82 Chain:A ((1-268))
-PELPEVETSRRGIEPHLVGATILHAVVRNGR-LRWP-VSEEIYR-LSDQPVLSVQRRAKYLLLEL-PEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKVLRYTDPRRFGAWLWTK--ELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTL--------KPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK
General information:
TITO was launched using:
RESULT:
Template:
1K82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153006 for 2094 contacts (-73.1/contact) +
2D Compatibility (PS) -27962 + (NN) -13874 + (LL) 532
1D Compatibility (HY) -19200 + (ID) 4950
Total energy: -218460.0 ( -104.33 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1K82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K82-query.scw
PDB file :
Tito_Scwrl_1K82.pdb
: