Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINNRIGIYPGTFDPITFGHIDIIKRACKLVDRLIIGVAENINKHTTFDAKLRTSMAENEIKRLEIDVDVVSFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGESVSKFVSVGVQKELINLNRIGSE
1VLH Chain:A ((13-169))
-----MKAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDL-DGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKLK----
General information:
TITO was launched using:
RESULT:
Template:
1VLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112942 for 1219 contacts (-92.7/contact) +
2D Compatibility (PS) -16698 + (NN) -5755 + (LL) 384
1D Compatibility (HY) -16400 + (ID) 3450
Total energy: -154861.0 ( -127.04 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1VLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLH-query.scw
PDB file :
Tito_Scwrl_1VLH.pdb
: