Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRIGQGYDVHKLAYDRDLIIGGVKIPYEKGLLGHSDADVLLHAITDAIIGAIGAGDIGHFFPDTDMVFKDADSAELLAEIWQKVEADGFRLGNLDATIIAEKPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK
3F0D Chain:A ((23-179))
DFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSD----FKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVR
General information:
TITO was launched using:
RESULT:
Template:
3F0D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115203 for 1304 contacts (-88.3/contact) +
2D Compatibility (PS) -16869 + (NN) -11192 + (LL) 376
1D Compatibility (HY) -12800 + (ID) 4450
Total energy: -160138.0 ( -122.81 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_3F0D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F0D-query.scw
PDB file :
Tito_Scwrl_3F0D.pdb
: