Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------MGEMTLAFIEEQYKELDNLNN-KENPAVLTRNTSTGELFVRKIIP-------SSFAPVIEQLKNLSSKYLPKIEVMIPKGNQLIVYEEYINGKNLAD-LMKTNAPFDTDEVTRLMLMLSDALTELHANAIIHRDIKPSNIMISS--DGVLKLIDFDASRMFEVGKNQDTVNLGTIGYAAPEQYGYSQTDARSDIYSIGVLMLELLLGKNTLPDKEHATSLEKIAMQAGAFDPEQRYQSIQDFRTAVKN----DSLGPSYVSELSDFTELDDSPTESAWKTPADEYENDFIPWYKHIPGFRTGTPWKMIVAVFGYMFLIFGLFSPPTEGVKMSHTVNFFSNFFLIVPAFVIFTNLCGIWSKLPLLKSPSPGTRKAGIVIYIIVCVSIYGIYNEIFS |
| 1KOB Chain:A ((23-374)) | INDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLN-PDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQP---------------------------------------AIGRIANFSSLRKHRPQEYQIYDSYFDRKEA--------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KOB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65716 for 2581 contacts (-25.5/contact) +
2D Compatibility (PS) -33798 + (NN) -14128 + (LL) 5400
1D Compatibility (HY) -11600 + (ID) 3100
Total energy: -122942.0 ( -47.63 by residue)
QMean score : 0.373
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