Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQ--VTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGR---ATVGKNCHIGAGSVLAGVV-----------------EPPSAQPVIVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKKLDAKTASKTEIMQELRQL
3VBI Chain:A ((37-190))
-----------------------------------------------------------------------------------------KNVLISKKASIYNPGVISIGNNVRIDDFCILSGKVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPNVVIGEGVAVGAMSMVKESLDDWYIYVGVPVRKIKARKR---------------
General information:
TITO was launched using:
RESULT:
Template:
3VBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140856 for 1062 contacts (-132.6/contact) +
2D Compatibility (PS) -14810 + (NN) -3748 + (LL) 7792
1D Compatibility (HY) -6800 + (ID) 1550
Total energy: -159972.0 ( -150.63 by residue)
QMean score : 0.631
(partial model without unconserved sides chains):
PDB file :
Tito_3VBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VBI-query.scw
PDB file :
Tito_Scwrl_3VBI.pdb
: