Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------MTIQWFPGHMAKAR-REVTEK-LKLVDVIFELVDARIPLSSSNPMLEEIIHQ--KRRVIILNKADTADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFK-IEQAAEKLMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQWIKVGKTLELLDTPGILWPKFEDQEIGYKLA---------LTGAIKDDLL-QME-EIAGYGLRFLEN---HYPDRLQTWLKVETVSEDPIETLAFIAEK-----------------RGLLDRYNDPDYSRAAETVVREIRQQKLGRMSFDFPNWEDEVE----------------------------------------------- |
| 1MKY Chain:A ((2-439)) | ATVLIVGRPNVGKSTLFNKLVKDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG-LDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPVDDEVFID---GRKYVFVDTAGLEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2099 for 1748 contacts (-1.2/contact) +
2D Compatibility (PS) -29919 + (NN) -5484 + (LL) 592
1D Compatibility (HY) -4400 + (ID) 2550
Total energy: -43860.0 ( -25.09 by residue)
QMean score : 0.273
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